{ "_id": "6a226f8ecd65a98ecbd48384", "Package": "gclink", "Title": "Gene-Cluster Discovery, Annotation and Visualization", "Version": "1.1", "Authors@R": "person(given = \"Liuyang\",\nfamily = \"Li\",\nemail = \"cyanobacteria@yeah.net\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-6004-9437\"))", "Description": "Performs end-to-end analysis of gene clusters—such as\nphotosynthesis, carbon/nitrogen/sulfur cycling, carotenoid,\nantibiotic, or viral marker genes (e.g., capsid, polymerase,\nintegrase)—from genomes and metagenomes. It parses Basic Local\nAlignment Search Tool (BLAST) results in tab-delimited format\nproduced by tools like NCBI BLAST+ and Diamond BLASTp, filters\nOpen Reading Frames (ORFs) by length, detects contiguous\nclusters of reference genes, optionally extracts genomic\ncoordinates, merges functional annotations, and generates\npublication-ready arrow plots. The package works seamlessly\nwith or without the coding sequences input and skips plotting\nwhen no functional groups are found. For more details see Li et\nal. (2023) .", "URL": "https://github.com/LiuyangLee/gclink", "BugReports": "https://github.com/LiuyangLee/gclink/issues", "License": "GPL-3", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "LazyData": "false", "Config/check/use_internal_tz": "TRUE", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-05 06:37:31 UTC", "User": "root" }, "Config/pak/sysreqs": "libicu-dev libjpeg-dev libpng-dev libxml2-dev\nlibssl-dev", "Repository": "https://liuyanglee.r-universe.dev", "Date/Publication": "2025-09-03 14:30:30 UTC", "RemoteUrl": "https://github.com/liuyanglee/gclink", "RemoteRef": "HEAD", "RemoteSha": "e8f397166440b1affae66c32f35a34c92723a101", "Author": "Liuyang Li [aut, cre] (ORCID: )", "Maintainer": "Liuyang Li ", "MD5sum": "89dcd02013f785e3470e32e96ed00411", "_user": "liuyanglee", "_type": "src", "_file": "gclink_1.1.tar.gz", "_fileid": "63615648e63fc4821607eec7eeca53ac7df2a843b27bf16de9a062bc5bf233a2", "_filesize": 1529741, "_sha256": 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"Imports" }, { "package": "ggplot2", "version": ">= 3.5.2", "role": "Imports" }, { "package": "utils", "role": "Imports" } ], "_owner": "liuyanglee", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-31", "n": 2 }, { "week": "2025-36", "n": 3 } ], "_tags": [], "_stars": 1, "_contributors": [ { "user": "liuyanglee", "count": 5, "uuid": 73391639 } ], "_userbio": { "uuid": 73391639, "type": "user", "name": "Liuyang Li" }, "_downloads": { "count": 121, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/gclink" }, "_devurl": "https://github.com/liuyanglee/gclink", "_searchresults": 0, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/gclink.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/liuyanglee/gclink", "_realowner": "liuyanglee", "_cranurl": true, "_releases": [ { "version": "1.1", "date": "2025-09-02" } ], 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