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  "Title": "Metabolic Pathway Completeness and Abundance Calculation",
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  "Description": "Provides tools for analyzing metabolic pathway\ncompleteness, abundance, and transcripts using KEGG Orthology\n(KO) data from (meta)genomic and (meta)transcriptomic studies.\nSupports both completeness (presence/absence) and\nabundance-weighted analyses. Includes built-in KEGG reference\ndatasets. For more details see Li et al. (2023)\n<doi:10.1038/s41467-023-42193-7>.",
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    "process_step_plus",
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    "read_and_process_pathway_infor",
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      "object": "KO_Sample_wide",
      "file": "KO_Sample_wide.rda",
      "class": [
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        "Marinobacter salarius",
        "Pseudooceanicola nanhaiensis",
        "Alteromonas australica",
        "Henriciella pelagia"
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      "table": true,
      "tojson": true
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      "title": "Convert Abundance Values to Presence/Absence Indicators",
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      "title": "Create and Export Pathway-Specific Module Sample Files",
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      "topics": [
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      "topics": [
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      "topics": [
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    },
    {
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      "title": "Metabolic Pathway Coverage Analysis",
      "topics": [
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