Package: mclink
Title: Metabolic Pathway Completeness and Abundance Calculation
Version: 1.3.1
Authors@R: 
    person(given = "Liuyang",
           family = "Li",
           email = "cyanobacteria@yeah.net",
           role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-6004-9437"))
Description: Provides tools for analyzing metabolic pathway
        completeness, abundance, and transcripts using KEGG Orthology
        (KO) data from (meta)genomic and (meta)transcriptomic studies.
        Supports both completeness (presence/absence) and
        abundance-weighted analyses. Includes built-in KEGG reference
        datasets. For more details see Li et al. (2023)
        <doi:10.1038/s41467-023-42193-7>.
URL: https://github.com/LiuyangLee/mclink
BugReports: https://github.com/LiuyangLee/mclink/issues
License: GPL-3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Imports: data.table (>= 1.17.8), dplyr (>= 1.1.4), matrixStats (>=
        1.0.0), parallel, stringr (>= 1.5.1), tibble (>= 3.2.1), utils
Depends: R (>= 3.5)
LazyData: false
Config/check/use_internal_tz: TRUE
NeedsCompilation: no
Packaged: 2026-11-04 11:51:51 UTC; root
Author: Liuyang Li [aut, cre] (<https://orcid.org/0000-0001-6004-9437>)
Maintainer: Liuyang Li <cyanobacteria@yeah.net>
Config/pak/sysreqs: libicu-dev
Repository: https://liuyanglee.r-universe.dev
Date/Publication: 2026-09-05 15:11:43 UTC
RemoteUrl: https://github.com/liuyanglee/mclink
RemoteRef: HEAD
RemoteSha: 7db7502c680722a59f5c42718d0bd060d8122a0d